Getting Started
You can install this package from github using pip:
pip install -e git+git@github.com:scitran/python-client.git#egg=scitran_client
Check out this example to see how to use it! you can run the example locally too
git clone git@github.com:scitran/python-client.git
cd python-client
virtualenv env
env/bin/pip install .
env/bin/python examples/fsl_bet.py
See our API Documentation for more detailed information about the methods available for the Scitran Client and Flywheel Analyzer.
Authenticating
The first time you attempt to connect to a Flywheel server, you will have to set up your credentials. You’ll see a message like this:
> ScitranClient()
You can find your API key by visiting https://flywheel-cni.scitran.stanford.edu/#/profile and scrolling to the bottom of the page.
If your key is blank, then click "Generate API Key"
Enter your API key here: ...
After entering your API key, your authentication configuration file at ~/.scitran_client/auth.json
will be set up. If you are trying to access a flywheel instance besides https://flywheel.scitran.stanford.edu, open an issue on this repo.
Example
from scitran_client import ScitranClient
client = ScitranClient()
print client.request('projects').json()[0]['label']
# "ADHD Visual Cuing Study"
See the examples directory for more!
Contributing
Want to run changes to this code locally? It’s pretty easy to get it added to an existing env. the --upgrade flag
ensures that your changes will get picked up.
pip install --upgrade $WORKSPACE/python-client
Lint your code with
make lint
Test your code with
make test
Publish a new version of the docs with
make publish_docs